BsPlugins

BioScripts is a python library providing bioinformatics scripts through a simple and consistent interface. It can be used on the command line or via a web service. Each script consists of a `plugin` running the algorithm and an html `form’ managing its inputs.

User manual

• Plugins collection

Developper documentation

• Writing your own plugin
  • Structure
    • Imports
    • Metadata
    • Plugin information
    • Plugin
    • Form
• Test a plugin
  • Test the form
  • Test the operation
    • By Hand
    • PRINT DEBUG
    • Unit testing
• Bioscript Forms
  • FileField
  • Multiple fields
  • Validation
    • Simple validation
    • BsFileField Validation

Indices and tables

• Index
• Module Index
• Search Page